|
2014-12-26 |
I created a Udemy course on my favourite linux commandline productivity techniques |
aliases, bash, commandline, linux, productivity, terminal |
|
2014-04-30 |
My top-languages-per-use-case list |
programming languages |
|
2014-04-16 |
New blog |
|
|
2014-03-05 |
The smallest pipeable python script |
Python, unix |
|
2014-01-16 |
Vote for ProcessWire to be packaged as a BitNami image |
|
|
2014-01-07 |
A recipe for combining static workflow definition with dynamic run request with luigi |
|
|
2013-11-13 |
Calling Java from Python without the JVM startup latency: NailGun and JPype |
java, JPype, JVM, NailGun, Python |
|
2013-10-16 |
New Google+ communities: Bioclipse, Cheminformatics, Semantic MediaWiki |
Bioclipse, Cheminformatics, planet bioclipse, Semantic MediaWiki |
|
2013-09-05 |
How to force update of the layout of a Eclipse JFace Wizard? |
Bioclipse, Eclipse, java, JFace |
|
2013-09-03 |
How to open a bash prompt with SSH agent enabled |
|
|
2013-08-30 |
Don't use Swedish keyboard with vim/screen/bash |
bash, linux, productivity, screen, vim |
|
2013-08-09 |
Easier debugging of Go programs on the command line with CGDB |
Debugging, Go |
|
2013-08-08 |
Profiling and creating call graphs for Go programs with "go tool pprof" |
Go |
|
2013-08-02 |
My Go(lang) links |
Go |
|
2013-07-30 |
Python-like generator functions in Go |
Go, Python |
|
2013-07-04 |
Workaround for non-working sound in MP4 clips in Cinelerra |
Cinelerra, Video |
|
2013-07-03 |
Lessons learned from UPPNEX just published in GigaScience |
uppnex |
|
2013-06-21 |
Go speedup with threading, for line by line string processing |
Bioinformatics, DNA, fasta, Go |
|
2013-05-20 |
Where to change between Emacs and Vim mode for bash line editing? |
bash, emacs, vim |
|
2013-05-10 |
Moar Languagez! GC content in Python, D, FPC, C++ and C (and now Go) |
Bioinformatics, C, C++, D, Free Pascal, Go, PyPy, Python |
|
2013-05-09 |
GC content continued: Python vs D vs C++ vs Free Pascal |
Bioinformatics, C++, D, Free Pascal, Python |
|
2013-05-09 |
Calculating GC content in python and D - How to get 10x speedup in D |
Bioinformatics, D, Python |
|
2013-05-06 |
Creating a Galaxy tool for R scripts that output images and PDFs |
Galaxy, PDF, Plotting, R |
|
2013-04-19 |
How to run a job via python-drmaa on UPPMAX |
DRMAA, Python, UPPMAX, uppnex |
|
2013-04-19 |
Commandline git diff that highlights exactly what is changed |
git |
|
2013-04-11 |
Simple command line python "IDE" with ipython, screen and vim |
linux, Python, screen, vim |
|
2013-03-22 |
Using the Chemical Translation Service with Python to get Inchis from chemical names |
Cheminformatics, Inchi, Python, XML |
|
2013-03-20 |
Impressions from the first D Coders Stockholm meetup |
D, Hackathon |
|
2013-03-02 |
Top D programming language links |
D |
|
2013-02-28 |
D is great for small utility programs |
D |
|
2013-02-25 |
How to fix default text editor in Linux Mint |
|
|
2013-02-16 |
How to output HTML with multiple files in Galaxy |
Galaxy |
|
2013-02-16 |
Fix linker order in D |
|
|
2013-02-16 |
The perfect Geany Color Scheme |
Geany |
|
2013-02-09 |
Python introduction |
|
|
2013-01-01 |
How to correctly compile with curl support in D |
D |
|
2012-11-21 |
How to properly install PHP Unit |
|
|
2012-11-16 |
Debug PHP with Xdebug in Sublime Text 2 (in Linux mint) |
SublimeText2 XDebug |
|
2012-09-28 |
Thoughts and bits from the iRODS Workshop in Linköping |
iRODS |
|
2012-08-07 |
UPPNEX reaching 1 PB of NGS storage |
NGS, storage, uppnex |
|
2012-04-23 |
UPPMAX arranges NextGen Sequencing Cloud/Hadoop hackathon in May |
Bioinformatics, cloud computing, hadoop, UPPMAX, uppnex |
|
2012-04-13 |
Convert unix time stamp to days (for formatting in Open Office etc) |
|
|
2012-03-23 |
Print numbers with leading zeros in bash |
bash, linux |
|
2012-03-09 |
How to make a bootable Linux Mint USB stick |
|
|
2012-01-16 |
Print epoch timestamp as formatted date or time |
Python |
|
2011-11-04 |
SMWCon Fall 2011 impressions |
Semantic MediaWiki |
|
2011-10-31 |
"Rhapsody" |
|
|
2011-10-31 |
My SMWCon Fall 2011 Talk now on YouTube |
Bioclipse, GSoC2010, planet bioclipse, Semantic MediaWiki, SPARQL |
|
2011-10-28 |
One week off to work on RDFIO |
GSoC2010, RDFIO, Semantic MediaWiki |
|
2011-10-26 |
iRODS Envizioned Architecture |
|
|
2011-10-20 |
Xubuntu Screenshot |
|
|
2011-10-20 |
Switched to Xubuntu |
Ubuntu, XFCE, Xubuntu |
|
2011-10-20 |
New majority voted twitter hashtag for NextGen Sequencing: #deepseq |
Next generation sequencing |
|
2011-10-05 |
Fixing Renault Water Blockage |
|
|
2011-10-05 |
Fixing Renault Water Blockage Closeup |
|
|
2011-09-27 |
Grepping SQL dumps with endless lines? Use the fold command! |
linux |
|
2011-09-24 |
My SMWCon Fall 2011 Talk |
Bioclipse, GSoC2010, planet bioclipse, Semantic MediaWiki |
|
2011-09-19 |
Essential screen flags and shortcuts |
linux, screen |
|
2011-09-09 |
How to convert DOS line breaks (\r\n) to UNIX ones (\n) |
DOS, linux |
|
2011-08-27 |
Tricks for upgrading from Drupal 5 to 6 |
Drupal |
|
2011-08-19 |
HPC Client Screencast: Experimental Job Config Wizard |
Bioclipse, Eclipse, HPC, linux, planet bioclipse, uppnex |
|
2011-08-13 |
Extract specific lines from a file, by file number |
bash, linux |
|
2011-08-12 |
How to get the workbench, in Eclipse RCP |
Eclipse |
|
2011-08-05 |
Activate Plugin Spy in Eclipse |
|
|
2011-08-01 |
Execute piped command in Python without the shell=True option |
Python |
|
2011-07-30 |
Check for SMW version |
MediaWiki, PHP, SMW |
|
2011-07-30 |
Where to check / fix any inconsistent path mapping in Eclipse PDT |
|
|
2011-07-29 |
Execute an external command in D |
D, system administration |
|
2011-07-28 |
Looping over ArrayList in Java |
java |
|
2011-07-28 |
(E)BNF parser for (parts of) the Galaxy ToolConfigs with ANTLR |
ANTLR, BNF, EBNF, Galaxy, java |
|
2011-07-26 |
Reset drupal admin password via database |
Drupal, mysql |
|
2011-07-21 |
Exercise in XSLT RegEx: (Partial) Galaxy ToolConfig to DocBook CmdSynopsis conversion |
Command line, DocBook, Galaxy, Regular expressions, XML, XSLT |
|
2011-07-20 |
How to format an XML document lacking line breaks and indents |
linux, Ubuntu, XML |
|
2011-07-17 |
How to enable chroot jail for sftp connections |
|
|
2011-07-15 |
How to extract all the lines of a file between two specific strings |
awk, Regular expressions |
|
2011-07-15 |
FIMS Project Status update - Thinking about CLI wrapper XML formats |
DocBook, Galaxy, planet bioclipse, uppnex |
|
2011-07-14 |
Got "select remote file" to work in the Cluster Job Config Wizard |
Eclipse, planet bioclipse, RSE |
|
2011-07-13 |
Eclipse RCP Troubleshooting hints |
Eclipse |
|
2011-06-14 |
How to fire up a File Service Subsystem with RSE for Eclipse |
RSE |
|
2011-06-14 |
Opening a remote file selection dialog with the RSE for Eclipse |
Eclipse, java, planet bioclipse, RSE |
|
2011-06-14 |
Separate blog for UPPMAX related posts |
UPPMAX, uppnex |
|
2011-05-30 |
How to get your hands on any internal RSE stuff |
RSE |
|
2011-05-03 |
iRODS for managing next gen sequencing data in an HPC environment |
iRODS, UPPMAX, uppnex |
|
2011-04-11 |
Installing PDT 2.2 with XDebug 2.1.1 on Eclipse Helios on Ubuntu |
Eclipse, PDT, PHP |
|
2011-04-04 |
Installing ArgoUML-Python for python code generation from UML |
Eclipse, Python, UML |
|
2011-04-01 |
How to run nosetest in PyDev |
Nose, PyDev, Unit testing |
|
2011-03-31 |
How to fix non-working product files in Eclipse? |
Eclipse |
|
2011-03-31 |
Where to add jar files to an Eclipse plug-in? |
Eclipse |
|
2011-03-03 |
A graphical client for running bioinformatics tools on HPC clusters |
Bioclipse, Bioinformatics, Next generation sequencing, planet bioclipse, uppnex |
|
2011-01-31 |
Repository of scripts for Next Generation Sequencing (NGS) at UPPNEX |
Next generation sequencing |
|
2011-01-31 |
Looping over a List<String> in Bioclipse's JS console |
Bioclipse, Javascript, planet bioclipse |
|
2011-01-17 |
Operator and Bracket Syntax in PyDev |
Python Eclipse |
|
2011-01-17 |
Operator and Bracket Syntax highlighting in PyDev |
|
|
2010-12-28 |
Eric Python IDE vs PyDev for Eclipse |
Python |
|
2010-12-28 |
PyDev Eclipse Python IDE |
|
|
2010-12-28 |
Eric Python IDE |
|
|
2010-11-10 |
UPPNEX web portal is live! |
NextGen Sequencing |
|
2010-10-11 |
Swedberg lecture: Trying to survive the data deluge: bioinformatics tools for analyzing and visualizing large data samples |
Bioinformatics, Data analysis, Visualization |
|
2010-09-27 |
How to reference a non-static method from a static context? |
|
|
2010-09-17 |
Editing Semantic MediaWiki from Bioclipse (with Screencast) |
Bioclipse, GSoC2010, planet bioclipse, Semantic MediaWiki |
|
2010-09-17 |
RDFIO 0.5.0 released |
GSoC2010, Semantic MediaWiki, SPARQL |
|
2010-09-13 |
How to get Bioclipse plugin development environment up running |
Bioclipse |
|
2010-09-09 |
Autumn is here - new projects starting |
Bioclipse, GSoC2010, planet bioclipse, Semantic MediaWiki, semantic web |
|
2010-08-16 |
RDFIO 0.4.0 released - GSoC Finished! |
GSoC2010, MediaWiki, Semantic MediaWiki, semantic web |
|
2010-08-08 |
Sensible wiki titles on RDF import with "pseudo RDF namespaces" |
GSoC2010, RDF, Semantic MediaWiki, semantic web |
|
2010-07-30 |
SPARQL Screen 0.3.0 |
|
|
2010-07-30 |
RDFIO 0.3.0 released |
GSoC2010, RDF, Semantic MediaWiki, SPARQL |
|
2010-07-22 |
New release of RDFIO (0.2.0) with security fixes |
GSoC2010, Semantic MediaWiki |
|
2010-07-17 |
Screencast: Installing Semantic MediaWiki and RDFIO from scratch on Ubuntu |
GSoC2010, RDF, Semantic MediaWiki, SPARQL |
|
2010-07-16 |
Screencast: RDF Import and SPARQL "Update" in Semantic MediaWiki |
GSoC2010, RDF, Semantic MediaWiki, SPARQL |
|
2010-07-15 |
Moved to new SVN repository (please update links) |
GSoC2010 |
|
2010-07-14 |
GSoC status update July 14 |
GSoC2010, Semantic MediaWiki, semantic web |
|
2010-07-13 |
XDebug Config Dialog in Eclipse (4) |
|
|
2010-07-13 |
Path mapping config |
|
|
2010-07-13 |
XDebug Config Dialog in Eclipse (3) |
|
|
2010-07-13 |
Debugging MediaWiki extensions with Eclipse for PHP and XDebug on Ubuntu 10.04 |
Eclipse, MediaWiki, PHP, Ubuntu |
|
2010-07-09 |
Considering name change: SMW RDF Connector --> SMW RDF IO |
GSoC2010 |
|
2010-07-09 |
New release of Bioclipse (2.4) |
Bioclipse |
|
2010-07-05 |
Final version of degree project report |
Bioclipse, planet bioclipse, PROLOG, semantic web |
|
2010-06-30 |
RDF properties to use for wiki titles on import - suggestions? |
GSoC2010, RDF, Semantic MediaWiki |
|
2010-06-29 |
SPARQL Endpoint works |
|
|
2010-06-29 |
ARC2 based SPARQL Endpoint for Semantic MediaWiki up running |
GSoC2010, Semantic MediaWiki, SPARQL |
|
2010-06-28 |
Populating SMW from RDF/XML (Nicer 2) |
|
|
2010-06-28 |
Even nicer with more prefixes |
GSoC2010, RDF, RDF/XML, Semantic MediaWiki |
|
2010-06-28 |
Populating SMW from RDF/XML (Nicer) |
|
|
2010-06-28 |
Using RDF namespace prefixes in wiki titles |
GSoC2010, RDF, RDF/XML, Semantic MediaWiki |
|
2010-06-28 |
Populating SMW from RDF/XML (Using NS prefixes) |
|
|
2010-06-26 |
Populating SMW from RDF/XML (First test) |
GSoC2010, RDF, RDF/XML, Semantic MediaWiki |
|
2010-06-26 |
Populating SMW With Triples (first test).png |
|
|
2010-06-19 |
SMWRDFConnector Architecture - mental picture |
GSoC2010 |
|
2010-06-19 |
Working ARC2 RDF Store connector committed |
ARC2, GSoC2010, RDF, Semantic MediaWiki |
|
2010-06-19 |
Back on track GSoC:ing |
GSoC2010 |
|
2010-06-18 |
Thesis presentation done |
|
|
2010-06-11 |
GSoC project next steps (updated in real time) |
GSoC2010 |
|
2010-06-11 |
GSoC project started |
GSoC2010 |
|
2010-06-03 |
Report approved - preliminary version for download |
Bioclipse, semantic web, SPARQL, SWI-Prolog |
|
2010-05-13 |
Google supporting Semantic Web development this summer |
GSoC2010 |
|
2010-05-13 |
First look at code - Thoughts and questions |
GSoC2010 |
|
2010-05-13 |
Playing with SMWWriter Result |
|
|
2010-05-13 |
Playing with SMWWriter |
GSoC2010, Semantic MediaWiki |
|
2010-05-13 |
Playing with SMWWriter |
|
|
2010-05-13 |
XDebug Config Dialog in Eclipse (2) |
|
|
2010-05-13 |
Testing set up of SPARQL endpoint for SMW using RAP and NetAPI |
GSoC2010, Semantic MediaWiki, SPARQL |
|
2010-05-13 |
Got Eclipse for PHP up running with XDebug |
Eclipse, GSoC2010, PHP |
|
2010-05-13 |
XDebug Config Dialog in Eclipse |
|
|
2010-05-12 |
NSF soon requiring data management plans |
Bioclipse, Semantic MediaWiki |
|
2010-05-01 |
Histogram of NMR Shift values in 25000 spectrum dataset |
|
|
2010-05-01 |
SWI-Prolog vs SWI-Prolog Minimal vs Jena |
|
|
2010-05-01 |
SWI-Prolog vs SWI-Prolog vs Jena |
|
|
2010-05-01 |
Prolog query much faster when mimicking SPARQL |
Jena, planet bioclipse, PROLOG, SPARQL, SWI-Prolog |
|
2010-04-30 |
Semantic matching |
semantic web |
|
2010-04-30 |
Automatically abbreviate authors first names in bibtex |
BibTex LaTex |
|
2010-04-27 |
GSoC Project accepted |
GSoC2010 |
|
2010-04-27 |
GSoC Proposal: "General RDF export/import in Semantic MediaWiki" |
GSoC2010, RDF, Semantic MediaWiki |
|
2010-04-26 |
Browse semantic data in parallell |
Freebase, semantic web, User interface |
|
2010-04-08 |
3rd Project Update (Integrating SWI-Prolog for Semantic Reasoning in Bioclipse) |
Bioclipse, Eclipse, java, Jena, Pellet, PROLOG, RDF, Reasoning, semantic web, SPARQL, SWI-Prolog |
|
2010-03-29 |
On larger datasets and more peaks in the query, Prolog is the fastest |
Jena, Pellet, PROLOG, SWI-Prolog |
|
2010-03-29 |
SWI-Prolog vs Jena (New tests) |
|
|
2010-03-29 |
SWI-Prolog vs Jena vs Pellet (New tests) |
|
|
2010-03-24 |
Correction of flawed results: Close competition between Jena and Prolog |
Bioclipse, Jena, Pellet, planet bioclipse, semantic web, SWI-Prolog |
|
2010-03-24 |
SWI-Prolog vs Jena vs Pellet (NMR Spectrum Similarity Search) |
|
|
2010-03-24 |
SWI-Prolog vs Jena (NMR Spectrum Similarity Search) |
|
|
2010-03-20 |
Semantic web for LAMP systems |
RDF, semantic web |
|
2010-03-19 |
GSoC project suggestion |
|
|
2010-03-16 |
Querying multiple SPARQL endpoints from single query, with Jena SERVICE extension |
Bioclipse, Jena, planet bioclipse, Semantic MediaWiki, semantic web, SPARQL |
|
2010-03-12 |
Need to add "colon dash" before rdf_register_ns |
PROLOG, SWI-Prolog |
|
2010-03-12 |
Spatial indexing for SWI-Prolog can be useful for modelling embryology with semantics |
Developmental Biology, Embryology, PROLOG, Semantic technology, semantic web |
|
2010-03-11 |
Pellet/SPARQL vs Prolog (NMR Spectrum similarity search) |
|
|
2010-03-11 |
Jena/SPARQL vs Prolog (NMR Spectrum similarity search) |
|
|
2010-03-11 |
Jena/SPARQL outperformed Prolog for spectrum similarity search |
Jena, Pellet, PROLOG, SPARQL, SWI-Prolog |
|
2010-03-10 |
Getting the Blipstart files right |
|
|
2010-03-08 |
Bioclipse is finalist for the Eclipse Community Awards 2010 |
|
|
2010-03-03 |
Screencast: Experimental Prolog integration in Bioclipse |
Bioclipse, planet bioclipse, PROLOG, SWI-Prolog |
|
2010-03-03 |
SBML turns 500 |
data formats, SBML, Systems Biology |
|
2010-03-03 |
Structure and behaviour to co-exist |
|
|
2010-03-02 |
Very good review on Semantic Web Tech in Life Sciences |
semantic web, Systems Biology |
|
2010-03-02 |
Most of the work is already? (Along the way to model the embryologic process with a semantics/simulation combination) |
Ontologies, Simulation, Systems Biology |
|
2010-03-01 |
Chemical ring and cage structures need rules (seemingly) |
Chemical structures, OWL, planet bioclipse, PROLOG, Reasoning, Rule languages |
|
2010-03-01 |
Building blocks of "wrapping simulations in semantics" already there |
computational biology, Ontologies, Reasoning, Simulation, Systems Biology |
|
2010-02-20 |
MIBBI Initiative: Minimum Information about a Biomedical or Biological Investigation |
|
|
2010-02-19 |
NMR SPARQL search problem solved |
NMR, Pellet, planet bioclipse, SPARQL |
|
2010-02-19 |
Great SPARQL FAQ |
SPARQL |
|
2010-02-18 |
Think I finally got it what Horn clauses are good for |
PROLOG |
|
2010-02-18 |
Tricky reasnong problem for SPARQL and OWL: Lists of property chains containing numerical value constraints |
NMR, OWL, Reasoning, semantic web, SPARQL |
|
2010-02-18 |
Representing lists in RDF |
N3, RDF |
|
2010-02-18 |
W3C Starter primer for semantic web |
|
|
2010-02-17 |
Learning what OWL profiles is (OWL 2 RL in particular) |
Logic Programming, OWL, Rule languages, semantic web |
|
2010-02-17 |
Semantic Science Portal contains interesting stuff |
semantic web |
|
2010-02-17 |
Powerful new modules for Drupal layouting and ease of use |
Drupal |
|
2010-02-17 |
"Orthogonal expressivity" of Pellet and Prolog? |
Bioclipse, Description Logic, OWL, planet bioclipse, PROLOG, semantic web |
|
2010-02-17 |
Automating answering of questions with no answers - by wrapping simulations in semantics |
Bioclipse, planet bioclipse, semantic web, Simulation |
|
2010-02-17 |
Java agent-based simulation software |
Agent Based Computing, computational biology, Simulation, Systems Biology |
|
2010-02-16 |
Installing Telia 3G Mobile Broadband with Option 505 3G modem on Ubuntu Karmic (9.10) |
|
|
2010-02-15 |
RDF in Drupal Screenshot |
Drupal, RDF, semantic web |
|
2010-02-10 |
Molecular biology eye candy |
computational biology, Gene Regulatory Networks, Simulation |
|
2010-02-10 |
Systems biology simulation software for future Bioclipse integration? |
planet bioclipse, Systems Biology |
|
2010-02-09 |
New Program in Computational & Systems Biology at Uppsala University |
|
|
2010-02-09 |
Project on hold (Course being taken) |
|
|
2009-12-15 |
Backtracking - Key difference between SPARQL and Prolog? |
planet bioclipse, SPARQL |
|
2009-12-07 |
[solved] User defined datatypes not working in OWL 1.X |
Bioclipse, OWL, Pellet |
|
2009-12-03 |
Idea: How to store Prolog rules in Bioclipse scripts |
Bioclipse, PROLOG |
|
2009-12-03 |
Performance comparison #2, Simple 13C Spectrum Similarity Search |
Bioclipse, Pellet, Performance, Reasoning, SWI-Prolog |
|
2009-12-01 |
Very good Prolog intro |
PROLOG |
|
2009-11-27 |
Regex to split up instensity and multiplicity in nmrshift data |
code snippets, Regular expressions |
|
2009-11-24 |
File based RDF storage in Pellet, first tests |
Bioclipse, Pellet |
|
2009-11-23 |
Initial performance comparison: Pellet vs Prolog in Bioclipse |
Bioclipse, Pellet, PROLOG |
|
2009-11-17 |
Bioclipse manager method to take arbitrary number of arguments |
Bioclipse, Bioclipse scripts, planet bioclipse |
|
2009-11-13 |
Catching up on NMR Spectroscopy |
NMR |
|
2009-11-12 |
A usage strategy emerges |
Bioclipse, BLIPKIT, Eclipse, planet bioclipse, PROLOG, SWI-Prolog |
|
2009-11-12 |
Problems to solve |
|
|
2009-11-12 |
Converting RDF predicates to Prolog convenience methods with RegEx |
PROLOG, RDF, Regular expressions, semantic web, SWI-Prolog |
|
2009-11-09 |
How to deal with rdf namespaces (does not work well with JPL) |
Bioclipse, BLIPKIT |
|
2009-11-09 |
Solved problem with using rdf_db (to load RDF data) from Bioclipse |
|
|
2009-11-04 |
Nice intro to RDF in Prolog (by Pellet author) |
Pellet, PROLOG, RDF, semantic web, SWI-Prolog |
|
2009-11-03 |
Pondering over strategies for evaluating BLIPKIT vs Pellet for use with NMRShift data |
BLIPKIT, NMR Shift, Pellet, RDF |
|
2009-11-01 |
Testing out querying Prolog from Bioclipse |
Bioclipse, BLIPKIT, Eclipse, JPL, planet bioclipse, PROLOG |
|
2009-10-31 |
Running Ubuntu Karmic Koala and sun-java-6 |
|
|
2009-10-16 |
Accessing BLIPKIT from command line Java or Eclipse Plug-in in Ubuntu |
BLIPKIT, JPL, PROLOG, SWI-Prolog, Ubuntu |
|
2009-10-16 |
Got blipkit started from inside Eclipse |
BLIPKIT, planet bioclipse, SWI-Prolog |
|
2009-10-16 |
Finally got blipkit started from java via jpl |
BLIPKIT, JPL, SWI-Prolog |
|
2009-10-15 |
Things learned today, 15/10 2009 |
|
|
2009-10-14 |
SWI-Prolog JPL up running inside Bioclipse - Thinking about next steps |
planet bioclipse, SWI-Prolog |
|
2009-10-14 |
"Refcards" for quickly getting into Bioclipse Plug-in development |
Eclipse, planet bioclipse |
|
2009-10-14 |
Eclipse boot process, classloading, incorporation of native code etc. |
Eclipse, java |
|
2009-10-14 |
Prolog plugin for Eclipse |
Eclipse, PROLOG |
|
2009-10-13 |
[SOLVED] How to set java.library.path for an Eclipse/Bioclipse plugin? |
Eclipse, JPL, SWI-Prolog |
|
2009-10-09 |
Proposed plan of attack for BioclipseWiki |
|
|
2009-10-08 |
Plugin development for Bioclipse - from scratch |
Bioclipse, Bioclipse SDK, Eclipse, planet bioclipse |
|
2009-10-07 |
[SOLVED] "Could not find library -lXpm" when building The SWI-Prolog XPCE package |
PROLOG, SWI-Prolog, Ubuntu |
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2009-10-07 |
Keeping track of installed files when building from source, in Ubuntu |
Ubuntu |
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2009-10-07 |
On the two main approaches for knowledge handling on the Semantic Web |
BLIPKIT, Bold, ECO, Knowledge representation, OWL, PROLOG, RIF, semantic web |
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2009-10-06 |
Java/Prolog interface (SWI Prolog JPL) up running! |
java, JNI, JPL, PROLOG, SWI-Prolog |
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2009-10-06 |
Reading tip: Quick overview of Prolog and it's role in Semantic Web |
Description Logic, Logic Programming, OWL, Pellet, PROLOG, semantic web |
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2009-10-05 |
Thea - reading OWL2 directly from Prolog |
BLIPKIT, OWL, PROLOG, semantic web |
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2009-10-04 |
Description Logic vs Prolog |
Description Logic, Logic Programming, Pellet, PROLOG |
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2009-10-01 |
Semantic web technologies contrasted in a few sentences |
OWL, RDF, RDF Schema, RDF/XML, Rule languages, semantic web, SWRL |
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2009-09-29 |
Plan for week 40 |
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2009-09-23 |
Cautiously Approaching SWRL |
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2009-09-23 |
Pellet: A practical OWL-DL reasoner |
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2009-09-23 |
Initial observations on the difference between Prolog based reasoners (Blipkit) and DL-reasoners (Pellet) |
Bioclipse, Pellet, PROLOG |
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2009-09-22 |
Plan for 23/9 |
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2009-09-22 |
A "Hello World" Prolog program |
PROLOG |
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2009-09-22 |
Installing Telia 3G Mobile Broadband with Option 505 3G modem on Ubuntu Jaunty (9.04) |
Ubuntu |
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2009-09-18 |
Switching to Blipkit/BioProlog |
BLIPKIT, planet bioclipse, PROLOG |
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2009-09-17 |
Installing gPapers in Ubuntu Jaunty (9.04) |
Notetaking software, Ubuntu |
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2009-09-16 |
Blipkit/BioProlog quotes |
BLIPKIT |
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2009-09-14 |
Problems getting DR-PROLOG up running |
DrProlog, PROLOG |
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2009-09-14 |
Status: Git on windows |
git, Windows |
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2009-09-11 |
Must-have git how tos |
git |
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2009-09-11 |
Empty plugin / Bioclipse manager up running, showing up in Bioclipse JS console |
Bioclipse, Bioclipse SDK, DrProlog |
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2009-09-11 |
How to check out a specific branch from github |
git |
|
2009-09-10 |
First week of my degree project passed |
planet bioclipse |
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2009-09-08 |
Even more abbreviations... |
databases, formats |
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2009-09-07 |
Starting work on creating a Bioclipse manager |
Bioclipse, Bioclipse SDK, java, planet bioclipse |
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2009-09-07 |
saml |
|
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2009-09-07 |
Up and running on Eclipse 3.5 (Bioclipse 2.2) |
Bioclipse, Eclipse |
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2009-09-07 |
Blipkit, A Biomedical Logic Programming Integration Kit |
BLIPKIT, PROLOG |
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2009-09-04 |
Learning abbreviations |
Bio2RDF, databases, formats, semantic web |
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2009-09-03 |
Upgrading to Eclipse 3.5 / Bioclipse 2.2 |
Bioclipse, Eclipse |
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2009-09-03 |
Had to learn some basic vim |
git, vim |
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2009-09-03 |
Looking into git |
git |
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2009-09-03 |
First blog entry |
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