Samuel's Tech Blog

My work at UPPMAX, on the Bioclipse based HPC Client i is progressing, slowly but steadily. I just screencasted an experimental version of the job configuration wizard, which loads command line tool definitions from the Galaxy workbench, and use them to generate a GUI for configuring the parameters to the command line tool in question, as well as the parameters for the Slurm Resource manager (used at UPPMAX). Have a look if you want :) :

The Wizard obviously has quite some rough edges still. My current TODO is as follows:

• Set sensible default values i widgets (i.e. when there is just 1 alt)
• Use checkboxes and radiobuttons for select fields with few options
• Use progress bar between wizard pages that takes time to load
• Decide how to take care of the cheetah #if#lse#endif syntax, available in some galaxy tool config files.
• Add validation
• Use a time widget for the job time
• Add a custom view with just a "connect" button, and showing only remote files for the configured host.
• More modular loading of modules (hierarchical etc.)
• More advanced parsing of options (i.e. allowing to omit params, rather than just saying "no" on them).

Etc ... More suggestions? :)